张阳博士简介
发布时间:2021-07-09 浏览次数:0次
张阳,博士,副教授、硕士研究生导师。研究方向:(1)AI驱动的药物靶点发现与机制研究:开发深度学习模型,结合分子动力学模拟技术,实现高精度靶点识别、蛋白结构与功能预测、药-靶结合机制探究等;(2)AI模型开发与智能化药物筛选:开发及优化基于序列的化合物和蛋白质相互作用预测模型,结合计算机辅助药物设计建立多标准药物筛选管线,通过活性验证及结构优化,助力基于靶点的药物发现;(3)生物医药大数据平台构建与应用:基于整合的生物大数据和深度学习模型,搭建生物医药数据云平台及开发在线筛选工具。主持河北省自然科学基金优秀青年基金项目、中央引导地方科技发展项目(自由探索类基础研究)、河北省高等学校科学技术青年拔尖研究项目和河北省高层次人才资助项目,参研河北省重点研发计划(生物医药创新专项)1项。近五年,参与发表SCI论文40余篇,其中以第一作者(共同第一作者)、通讯作者在Nucleic Acids Res.、Proc. Natl. Acad. Sci. U. S. A.、J. Chem. Inf. Model.、J. Pharm. Anal.等权威期刊上发表系列研究性论文,申请相关专利5项。
代表性论文:
(1) Mou M, Zhang Y, Qian Y, Zhou Z, Liao Y, Niu T, Hu W, Chen Y, Jiang R, Zhao H, Dai H *, Zhang Y *, Fu T *. druglikeFilter 1.0: An AI powered filter for collectively measuring the drug-likeness of compounds. J Pharm Anal. 2025; 101298.
(2) Liu X #, Yang H #, Liu X #, Mou M, Liu J, Yan W, Niu T, Zhang Z, Shi H, Su X, Li X *, Zhang Y *, Jia Q *. Discovery of selective HDAC6 inhibitors driven by artificial intelligence and molecular dynamics simulation approaches. J Pharm Anal. 2025; 101338.
(3) Zhang B, Shi X, Liu X, Liu Y, Li X, Wang Q, Huang D, Zhao W, Cui J, Cao Y, Chai X, Wang J, Zhang Y *, Wang X *, Jia Q *. Discovery of E0199: A novel compound targeting both peripheral NaV and KV7 channels to alleviate neuropathic pain. J Pharm Anal. 2025; 15: 101132.
(4) Sun X #, Li H #, Chen Z #, Zhang Y #, Wei Z, Xu H, Liao Y, Jiang W, Ge Y, Zheng L, Li T, Wu Y, Luo M, Fang L, Dong X, Xiao M, Han L *, Jia Q *, Zhu F *. PDCdb: The biological activity and pharmaceutical information of peptide-drug conjugate (PDC). Nucleic Acids Res. 2025; 53: D1476–D1485.
(5) Li F #, Mou M #, Li X, Xu W, Yin J *, Zhang Y *, Zhu F *. DrugMAP 2.0: Molecular atlas and pharma-information of all drugs. Nucleic Acids Res. 2025; 53: D1372–D1382.
(6) Zhang Y #, Liu X #, Li F #, Yin J #, Yang H #, Li X, Liu X, Chai X, Niu T, Zeng S *, Jia Q *, Zhu F *. INTEDE 2.0: The metabolic roadmap of drugs. Nucleic Acids Res. 2024; 52: D1355–D1364.
(7) Li X, Wang C, Chai X, Liu X, Qiao K, Fu Y, Jin Y, Jia Q *, Zhu F *, Zhang Y *. Discovery of potent selective HDAC6 inhibitors with 5-phenyl-1H-indole fragment: Virtual screening, rational design, and biological evaluation. J Chem Inf Model. 2024; 64(15): 6147–6161.
(8) Fu T #, Li F #, Zhang Y #, Yin J #, Qiu W, Li X, Liu X, Xin W, Wang C, Yu L, Gao J, Zheng Q *, Zeng S *, Zhu F *. VARIDT 2.0: Structural variability of drug transporter. Nucleic Acids Res. 2022; 50: D1417–D1431.
(9) Han Z, He D *, Zhang Y *. Genetic variant rs7820258 regulates the expression of indoleamine 2,3-dioxygenase 1 in brain regions. Proc Natl Acad Sci USA. 2020; 117(39): 24035–24036.
(10) Zhang Y #, Zheng G #, Fu T, Hong J, Li F, Yao X, Xue W *, Zhu F *. The binding mode of vilazodone in the human serotonin transporter elucidated by ligand docking and molecular dynamics simulations. Phys Chem Chem Phys. 2020; 22(9): 5132–5144.
专利申请:
(1)张阳,李学东,贾庆忠,刘新岗,贺殿,朱峰;具有HDACs抑制活性的喹唑啉-4-胺衍生物及其制备方法与用途,2022-4-14,中国,ZL202210391023.4;
(2)贾庆忠,李学东,刘新岗,张阳,王松松,剧苗苗,史晓兴,王香雨,祁金龙,张海林;一种具有NaV1.7钠离子通道靶向抑制作用的化合物及其药物组合物和用途,2022-12-13,中国,CN202211594787.X;
(3)贾庆忠,张阳,朱峰,李学东,付炎,刘新岗,柴旭,刘鑫雨;具有HDAC6选择性抑制活性的5-芳基-1H-吲哚衍生物及其制备方法与用途,2024-8-02,中国,CN118420515A;
(4)朱峰,牟敏杰,葛一超,牛天乐,张阳;一种基于对比学习和蛋白聚类策略的无配体靶标的配体预测方法,2025-03-04,中国,2025102490130;
(5)朱峰,张阳,倪锋,牟敏杰,刘新岗;一种具有抗高表达AGTRAP乳腺癌活性的化合物及其应用,2025-02-27,中国,2025102241246。